read data from a file — import

reads data, renames columns appropriately, discards unused columns, factors and reorders, discards duplicate rows

Usage

import_data(
  file,
  treatment = "genotype",
  bio_rep = "bio_rep",
  tech_rep = "tech_rep",
  quant = "total_area",
  seconds = "seconds",
  gene_id = "gene_id",
  peptide = "peptide_sequence"
)

Arguments

file: Path to the file to load - must be a csv file
treatment: Column containing the treatment of the observation
bio_rep: Column containing the biological replicate of the observation
tech_rep: Column containing the technical replicate of the observation
quant: Column containing the quantitation data
seconds: Column containing timepoint of observation
gene_id: Column containing the id of the gene this hit
peptide: Column containing the sequence of this peptide

Value

tibble with columns id, gene_id, peptide, treatment, seconds, bio_rep, tech_rep, quant