Compare within strata

Runs comparisons separately within each level of stratifying factor(s).

Usage

compare_within_strata(
  data,
  compare,
  ref,
  within,
  method,
  test,
  alpha,
  fdr_method,
  bf_threshold = 3
)

Arguments

data

pepdiff_data object

compare

Factor to compare

ref

Reference level

within

Factor(s) to stratify by

method

Analysis method

test

Pairwise test (if applicable)

alpha

Significance threshold

fdr_method

FDR correction method

Value

Combined results across strata