Returns a summary of singleton counts per assembly, optionally including
the percentage of total proteins that are singletons.
Usage
singletons_by_assembly(orthogroups, proteins = NULL)
Arguments
- orthogroups
An orthogroup_result object.
- proteins
Optional protein_collection to calculate percentages.
Value
A tibble with columns:
assembly: Assembly name
n_singletons: Number of singletons in assembly
n_total: Total proteins in assembly (if proteins provided)
pct_singleton: Percentage of proteins that are singletons (if proteins provided)
Examples
if (FALSE) { # \dontrun{
summary <- singletons_by_assembly(clusters)
summary_with_pct <- singletons_by_assembly(clusters, proteins = proteins)
} # }
