Plot effector score distributions — plot

Creates density plots or histograms of effector scores from a protein collection.

Usage

plot_scores(
  proteins,
  score_column = "custom_score",
  by_assembly = FALSE,
  threshold = NULL,
  plot_type = "density"
)

Arguments

proteins: A protein_collection object with score data.
score_column: Character. Column name for scores (default: "custom_score").
by_assembly: Logical. Whether to facet by assembly (default: FALSE). If TRUE, creates separate panels for each assembly.
threshold: Numeric or NULL. If specified, draws a vertical line at this value to show where a score cutoff would fall.
plot_type: Character. Plot type: "density" (default) or "histogram".

Value

A ggplot2 object.

Examples

if (FALSE) { # \dontrun{
plot_scores(proteins)
plot_scores(proteins, threshold = 5.0)
plot_scores(proteins, by_assembly = TRUE)
plot_scores(proteins, plot_type = "histogram")
} # }