Create an orthogroup_result object — new_orthogroup_result • paneffectR

Result of clustering proteins across assemblies.

Usage

new_orthogroup_result(
  orthogroups,
  method,
  parameters = list(),
  singletons = NULL,
  stats = NULL
)

Arguments

orthogroups: A tibble with columns: orthogroup_id, assembly, protein_id.
method: Character. Clustering method used.
parameters: List. Clustering parameters used.
singletons: A tibble. Proteins not assigned to any group.
stats: A tibble. Orthogroup sizes and assembly coverage.

Value

An orthogroup_result S3 object.